PDB_ID STRUCTURE TITLE DEPOSITION DATE RELEASE DATE AUTHORS TITLE JOURNAL YEAR VOLUME FIRST PAGE LAST PAGE 1UAG UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE 1997-03-13 1998-03-18 Bertrand, J.A.,Auger, G.,Fanchon, E.,Martin, L.,Blanot, D.,van Heijenoort, J.,Dideberg, O. Crystal structure of UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase from Escherichia coli. EMBO J. 1997 16 3416 3425 1AVV HIV-1 NEF PROTEIN, UNLIGANDED CORE DOMAIN 1997-09-21 1998-03-25 Arold, S.,Franken, P.,Strub, M.P.,Hoh, F.,Benichou, S.,Benarous, R.,Dumas, C. The crystal structure of HIV-1 Nef protein bound to the Fyn kinase SH3 domain suggests a role for this complex in altered T cell receptor signaling. Structure 1997 5 1361 1372 1AVZ V-1 NEF PROTEIN IN COMPLEX WITH WILD TYPE FYN SH3 DOMAIN 1997-09-23 1998-03-25 Arold, S.,Franken, P.,Strub, M.P.,Hoh, F.,Benichou, S.,Benarous, R.,Dumas, C. The crystal structure of HIV-1 Nef protein bound to the Fyn kinase SH3 domain suggests a role for this complex in altered T cell receptor signaling. Structure 1997 5 1361 1372 1KB5 MURINE T-CELL RECEPTOR VARIABLE DOMAIN/FAB COMPLEX 1997-04-06 1998-04-08 Housset, D.,Mazza, G.,Gregoire, C.,Piras, C.,Malissen, B.,Fontecilla-Camps, J.C. The three-dimensional structure of a T-cell antigen receptor V alpha V beta heterodimer reveals a novel arrangement of the V beta domain. EMBO J. 1997 16 4205 4216 1A27 HUMAN 17-BETA-HYDROXYSTEROID-DEHYDROGENASE TYPE 1 C-TERMINAL DELETION MUTANT COMPLEXED WITH ESTRADIOL AND NADP+ 1998-01-16 1998-05-27 Mazza, C. Human Type I 17Beta-Hydroxysteroid Dehydrogenase: Site Directed Mutagenesis and X-Ray Crystallography Structure-Function Analysis Thesis, Universite Joseph Four 1997 0 0 0 1FDU HUMAN 17-BETA-HYDROXYSTEROID-DEHYDROGENASE TYPE 1 MUTANT H221L COMPLEXED WITH ESTRADIOL AND NADP+ 1998-01-14 1998-05-27 Mazza, C.,Breton, R.,Housset, D.,Fontecilla-Camps, J.C. Unusual charge stabilization of NADP+ in 17beta-hydroxysteroid dehydrogenase. J.Biol.Chem. 1998 273 8145 8152 1FDV HUMAN 17-BETA-HYDROXYSTEROID-DEHYDROGENASE TYPE 1 MUTANT H221L COMPLEXED WITH NAD+ 1998-01-15 1998-05-27 Mazza, C.,Breton, R.,Housset, D.,Fontecilla-Camps, J.C. Unusual charge stabilization of NADP+ in 17beta-hydroxysteroid dehydrogenase. J.Biol.Chem. 1998 273 8145 8152 1A5C FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE FROM PLASMODIUM FALCIPARUM 1998-02-13 1998-06-10 Kim, H.,Certa, U.,Dobeli, H.,Jakob, P.,Hol, W.G. Crystal structure of fructose-1,6-bisphosphate aldolase from the human malaria parasite Plasmodium falciparum. Biochemistry 1998 37 4388 4396 1FRF CRYSTAL STRUCTURE OF THE NI-FE HYDROGENASE FROM DESULFOVIBRIO FRUCTOSOVORANS 1998-07-21 1998-07-29 Rousset, M.,Montet, Y.,Guigliarelli, B.,Forget, N.,Asso, M.,Bertrand, P.,Fontecilla-Camps, J.C.,Hatchikian, E.C. 3Fe-4S] to [4Fe-4S] cluster conversion in Desulfovibrio fructosovorans [NiFe] hydrogenase by site-directed mutagenesis Proc.Natl.Acad.Sci.USA 1998 95 11625 11630 1BVT METALLO-BETA-LACTAMASE FROM BACILLUS CEREUS 569/H/9 1998-09-18 1998-09-23 Carfi, A.,Duee, E.,Galleni, M.,Frere, J.M.,Dideberg, O. 1.85 A resolution structure of the zinc (II) beta-lactamase from Bacillus cereus. Acta Crystallogr.,Sect.D 1998 54 313 323 1BU1 SRC FAMILY KINASE HCK SH3 DOMAIN 1998-09-09 1998-11-11 Arold, S.,O'Brien, R.,Franken, P.,Strub, M.P.,Hoh, F.,Dumas, C.,Ladbury, J.E. RT loop flexibility enhances the specificity of Src family SH3 domains for HIV-1 Nef. Biochemistry 1998 37 14683 14691 1A0R HETEROTRIMERIC COMPLEX OF PHOSDUCIN/TRANSDUCIN BETA-GAMMA 1997-12-05 1998-12-30 Loew, A.,Ho, Y.K.,Blundell, T.,Bax, B. Phosducin induces a structural change in transducin beta gamma. Structure 1998 6 1007 1019 2PHK THE CRYSTAL STRUCTURE OF A PHOSPHORYLASE KINASE PEPTIDE SUBSTRATE COMPLEX: KINASE SUBSTRATE RECOGNITION 1998-06-18 1999-01-13 Lowe, E.D.,Noble, M.E.,Skamnaki, V.T.,Oikonomakos, N.G.,Owen, D.J.,Johnson, L.N. The crystal structure of a phosphorylase kinase peptide substrate complex: kinase substrate recognition. EMBO J. 1997 16 6646 6658 1TR1 CRYSTAL STRUCTURE OF E96K MUTATED BETA-GLUCOSIDASE A FROM BACILLUS POLYMYXA, AN ENZYME WITH INCREASED THERMORESISTANCE 1998-03-12 1999-04-20 Sanz-Aparicio, J.,Hermoso, J.A.,Martinez-Ripoll, M.,Lequerica, J.L.,Polaina, J. Crystal structure of beta-glucosidase A from Bacillus polymyxa: insights into the catalytic activity in family 1 glycosyl hydrolases. J.Mol.Biol. 1998 275 491 502 1B0P CRYSTAL STRUCTURE OF PYRUVATE-FERREDOXIN OXIDOREDUCTASE FROM DESULFOVIBRIO AFRICANUS 1998-11-12 1999-04-23 Chabriere, E.,Charon, M.H.,Volbeda, A.,Pieulle, L.,Hatchikian, E.C.,Fontecilla-Camps, J.C. Crystal structures of the key anaerobic enzyme pyruvate:ferredoxin oxidoreductase, free and in complex with pyruvate. Nat.Struct.Biol. 1999 6 182 190 1CC1 CRYSTAL STRUCTURE OF A REDUCED, ACTIVE FORM OF THE NI-FE-SE HYDROGENASE FROM DESULFOMICROBIUM BACULATUM 1999-03-03 1999-06-01 Garcin, E.,Vernede, X.,Hatchikian, E.C.,Volbeda, A.,Frey, M.,Fontecilla-Camps, J.C. The crystal structure of a reduced [NiFeSe] hydrogenase provides an image of the activated catalytic center Structure Fold.Des. 1999 7 557 566 1BH8 HTAFII18/HTAFII28 HETERODIMER CRYSTAL STRUCTURE 1998-06-16 1999-06-22 Birck, C.,Poch, O.,Romier, C.,Ruff, M.,Mengus, G.,Lavigne, A.C.,Davidson, I.,Moras, D. Human TAF(II)28 and TAF(II)18 interact through a histone fold encoded by atypical evolutionary conserved motifs also found in the SPT3 family. Cell 1998 94 239 249 1BH9 HTAFII18/HTAFII28 HETERODIMER CRYSTAL STRUCTURE WITH BOUND PCMBS 1998-06-16 1999-06-22 Birck, C.,Poch, O.,Romier, C.,Ruff, M.,Mengus, G.,Lavigne, A.C.,Davidson, I.,Moras, D. Human TAF(II)28 and TAF(II)18 interact through a histone fold encoded by atypical evolutionary conserved motifs also found in the SPT3 family. Cell 1998 94 239 249 1QKJ T4 PHAGE B-GLUCOSYLTRANSFERASE, SUBSTRATE BINDING AND PROPOSED CATALYTIC MECHANISM 1999-07-22 1999-07-28 Morera, S.,Imberty, A.,Aschke-Sonnenborn, U.,Ruger, W.,Freemont, P.S. T4 phage beta-glucosyltransferase: substrate binding and proposed catalytic mechanism. J.Mol.Biol. 1999 292 717 730 1CK7 GELATINASE A (FULL-LENGTH) 1999-04-28 1999-08-25 Morgunova, E.,Tuuttila, A.,Bergmann, U.,Isupov, M.,Lindqvist, Y.,Schneider, G.,Tryggvason, K. Structure of human pro-matrix metalloproteinase-2: activation mechanism revealed. Science 1999 284 1667 1670 1QD5 OUTER MEMBRANE PHOSPHOLIPASE A FROM ESCHERICHIA COLI 1999-07-09 1999-10-25 Snijder, H.J.,Ubarretxena-Belandia, I.,Blaauw, M.,Kalk, K.H.,Verheij, H.M.,Egmond, M.R.,Dekker, N.,Dijkstra, B.W. Structural evidence for dimerization-regulated activation of an integral membrane phospholipase. Nature 1999 401 717 721 1QT9 OXIDIZED [2FE-2S] FERREDOXIN FROM ANABAENA PCC7119 1999-07-01 1999-12-02 Morales, R.,Charon, M.H.,Hudry-Clergeon, G.,Petillot, Y.,Norager, S.,Medina, M.,Frey, M. Refined X-ray structures of the oxidized, at 1.3 A, and reduced, at 1.17 A, [2Fe-2S] ferredoxin from the cyanobacterium Anabaena PCC7119 show redox-linked conformational changes. Biochemistry 1999 38 15764 15773 462D CRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITE 1999-03-18 1999-12-02 Ennifar, E.,Yusupov, M.,Walter, P.,Marquet, R.,Ehresmann, B.,Ehresmann, C.,Dumas, P. The crystal structure of the dimerization initiation site of genomic HIV-1 RNA reveals an extended duplex with two adenine bulges. Structure Fold.Des. 1999 7 1439 1449 3RAP The small G protein Rap2 in a non catalytic complex with GTP 1999-05-31 1999-12-08 Menetrey, J.,Cherfils, J. Structure of the small G protein Rap2 in a non-catalytic complex with GTP. Proteins 1999 37 465 473 1B2R FERREDOXIN-NADP+ REDUCTASE (MUTATION: E 301 A) 1998-11-27 1999-12-15 Mayoral, T.,Medina, M.,Sanz-Aparicio, J.,Gomez-Moreno, C.,Hermoso, J.A. Structural basis of the catalytic role of Glu301 in Anabaena PCC 7119 ferredoxin-NADP+ reductase revealed by x-ray crystallography. Proteins 2000 38 60 69 1C9U CRYSTAL STRUCTURE OF THE SOLUBLE QUINOPROTEIN GLUCOSE DEHYDROGENASE IN COMPLEX WITH PQQ 1999-08-03 2000-02-04 Oubrie, A.,Rozeboom, H.J.,Kalk, K.H.,Olsthoorn, A.J.,Duine, J.A.,Dijkstra, B.W. Structure and mechanism of soluble quinoprotein glucose dehydrogenase. EMBO J. 1999 18 5187 5194 1YLV SCHIFF-BASE COMPLEX OF YEAST 5-AMINOLAEVULINIC ACID DEHYDRATASE WITH LAEVULINIC ACID 1999-02-22 2000-02-23 Erskine, P.T.,Newbold, R.,Roper, J.,Coker, A.,Warren, M.J.,Shoolingin-Jordan, P.M.,Wood, S.P.,Cooper, J.B. The Schiff base complex of yeast 5-aminolaevulinic acid dehydratase with laevulinic acid. Protein Sci. 1999 8 1250 1256 2UAG UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE 1999-02-23 2000-02-25 Bertrand, J.A.,Auger, G.,Martin, L.,Fanchon, E.,Blanot, D.,Le Beller, D.,van Heijenoort, J.,Dideberg, O. Determination of the MurD mechanism through crystallographic analysis of enzyme complexes. J.Mol.Biol. 1999 289 579 590 1CF2 THREE-DIMENSIONAL STRUCTURE OF D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM THE HYPERTHERMOPHILIC ARCHAEON METHANOTHERMUS FERVIDUS 1999-03-24 2000-03-29 Charron, C.,Talfournier, F.,Isupov, M.N.,Branlant, G.,Littlechild, J.A.,Vitoux, B.,Aubry, A. Crystallization and preliminary X-ray diffraction studies of D-glyceraldehyde-3-phosphate dehydrogenase from the hyperthermophilic archaeon Methanothermus fervidus. Acta Crystallogr.,Sect.D 1999 55 1353 1355 1CIV CHLOROPLAST NADP-DEPENDENT MALATE DEHYDROGENASE FROM FLAVERIA BIDENTIS 1999-04-01 2000-04-05 Carr, P.D.,Verger, D.,Ashton, A.R.,Ollis, D.L. Chloroplast NADP-malate dehydrogenase: structural basis of light-dependent regulation of activity by thiol oxidation and reduction. Structure Fold.Des. 1999 7 461 475 1CJX CRYSTAL STRUCTURE OF PSEUDOMONAS FLUORESCENS HPPD 1999-04-20 2000-04-26 Serre, L.,Sailland, A.,Sy, D.,Boudec, P.,Rolland, A.,Pebay-Peyroula, E.,Cohen-Addad, C. Crystal structure of Pseudomonas fluorescens 4-hydroxyphenylpyruvate dioxygenase: an enzyme involved in the tyrosine degradation pathway. Structure Fold.Des. 1999 7 977 988 1E0D UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE 2000-03-24 2000-06-09 Bertrand, J.A.,Auger, G.,Fanchon, E.,Martin, L.,Blanot, D.,van Heijenoort, J.,Dideberg, O. Crystal structure of UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase from Escherichia coli. EMBO J. 1997 16 3416 3425 3CAO OXIDISED STRUCTURE OF THE ACIDIC CYTOCHROME C3 FROM DESULFOVIBRIO AFRICANUS 1998-11-17 2000-07-23 Norager, S.,Legrand, P.,Pieulle, L.,Hatchikian, C.,Roth, M. Crystal structure of the oxidised and reduced acidic cytochrome c3from Desulfovibrio africanus. J.Mol.Biol. 1999 290 881 902 3CAR REDUCED STRUCTURE OF THE ACIDIC CYTOCHROME C3 FROM DESULFOVIBRIO AFRICANUS 1998-11-17 2000-07-23 Norager, S.,Legrand, P.,Pieulle, L.,Hatchikian, C.,Roth, M. Crystal structure of the oxidised and reduced acidic cytochrome c3from Desulfovibrio africanus. J.Mol.Biol. 1999 290 881 902 1EEH UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE 2000-01-31 2001-01-17 Bertrand, J.A.,Fanchon, E.,Martin, L.,Chantalat, L.,Auger, G.,Blanot, D.,van Heijenoort, J.,Dideberg, O. "Open" structures of MurD: domain movements and structural similarities with folylpolyglutamate synthetase. J.Mol.Biol. 2000 301 1257 1266 1FIR CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3) 2000-08-06 2001-01-17 Benas, P.,Bec, G.,Keith, G.,Marquet, R.,Ehresmann, C.,Ehresmann, B.,Dumas, P. The crystal structure of HIV reverse-transcription primer tRNA(Lys,3) shows a canonical anticodon loop. RNA 2000 6 1347 1355 1E4I 2-DEOXY-2-FLUORO-BETA-D-GLUCOSYL/ENZYME INTERMEDIATE COMPLEX OF THE BETA-GLUCOSIDASE FROM BACILLUS POLYMYXA 2000-07-05 2001-07-05 Sanz-Aparicio, J.,Gonzalez, B.,Hermoso, J.A.,Polaina, J.,Arribas, J.C.,Canada, J. Crystal Structure of the Glucoside-Enzyme Covalent Intermediate of Beta Glucosidase a from Bacillus Polymyxa To be Published 0 0 0 0 1G94 CRYSTAL STRUCTURE ANALYSIS OF THE TERNARY COMPLEX BETWEEN PSYCHROPHILIC ALPHA AMYLASE FROM PSEUDOALTEROMONAS HALOPLANCTIS IN COMPLEX WITH A HEPTA-SACCHARIDE AND A TRIS MOLECULE 2000-11-22 2001-12-12 Aghajari, N.,Roth, M.,Haser, R. Crystallographic evidence of a transglycosylation reaction: ternary complexes of a psychrophilic alpha-amylase. Biochemistry 2002 41 4273 4280 1QH0 FERREDOXIN:NADP+ REDUCTASE MUTANT WITH LEU 76 MUTATED BY ASP AND LEU 78 MUTATED BY ASP 1999-05-10 2002-02-27 Martinez-Julvez, M.,Nogues, I.,Faro, M.,Hurley, J.K.,Brodie, T.B.,Mayoral, T.,Sanz-Aparicio, J.,Hermoso, J.A.,Stankovich, M.T.,Medina, M.,Tollin, G.,Gomez-Moreno, C. Role of a cluster of hydrophobic residues near the FAD cofactor in Anabaena PCC 7119 ferredoxin-NADP+ reductase for optimal complex formation and electron transfer to ferredoxin. J.Biol.Chem. 2001 276 27498 27510 1KHK E. COLI ALKALINE PHOSPHATASE MUTANT (D153HD330N) 2001-11-30 2002-03-13 Du, M.H.,Lamoure, C.,Muller, B.H.,Bulgakov, O.V.,Lajeunesse, E.,Menez, A.,Boulain, J.C. Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase. J.Mol.Biol. 2002 316 941 953 1KHN E. COLI ALKALINE PHOSPHATASE MUTANT (D153HD330N) ZINC FORM 2001-11-30 2002-03-13 Du, M.H.,Lamoure, C.,Muller, B.H.,Bulgakov, O.V.,Lajeunesse, E.,Menez, A.,Boulain, J.C. Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase. J.Mol.Biol. 2002 316 941 953 1KH4 E. COLI ALKALINE PHOSPHATASE MUTANT (D330N) IN COMPLEX WITH PHOSPHATE 2001-11-29 2002-03-27 Du, M.H.,Lamoure, C.,Muller, B.H.,Bulgakov, O.V.,Lajeunesse, E.,Menez, A.,Boulain, J.C. Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase. J.Mol.Biol. 2002 316 941 953 1G9H TERNARY COMPLEX BETWEEN PSYCHROPHILIC ALPHA-AMYLASE, COMII (PSEUDO TRI-SACCHARIDE FROM BAYER) AND TRIS (2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL) 2000-11-23 2002-06-26 AGHAJARI, N.,ROTH, M.,HASER, R. Crystallographic evidence of a transglycosylation reaction: ternary complexes of a psychrophilic alpha-amylase. Biochemistry 2002 41 4273 4280 1EAK CATALYTIC DOMAIN OF PROMMP-2 E404Q MUTANT 2001-07-12 2002-08-22 Bergmann, U.,Tuuttila, A.,Morgunova, E.,Tryggvason, K. Crystal Structure of Human Mmp-2 Reveals a New P To be Published 0 0 0 0 1GO2 STRUCTURE OF FERREDOXIN-NADP+ REDUCTASE WITH LYS 72 REPLACED BY GLU (K72E) 2001-10-15 2002-10-17 Mayoral, T.,Martinez-Julvez, M.,Perez-Dorado, I.,Sanz-Aparicio, J.,Gomez-Moreno, C.,Medina, M.,Hermoso, J.A. Structural analysis of interactions for complex formation between Ferredoxin-NADP+ reductase and its protein partners. Proteins 2005 59 592 602 1OMJ CRYSTAL STRUCTURE OF A PSYCHROPHILIC ALKALINE PROTEASE FROM PSEUDOMONAS TAC II 18 2003-02-25 2003-07-15 Ravaud, S.,Gouet, P.,Haser, R.,Aghajari, N. Probing the role of divalent metal ions in a bacterial psychrophilic metalloprotease: binding studies of an enzyme in the crystalline state by x-ray crystallography. J.Bacteriol. 2003 185 4195 4203 1QGY Ferredoxin:NADP+ reductase mutant with Lys 75 replaced by Glu (K75E) 1999-05-10 2004-03-09 Mayoral, T.,Martinez-Julvez, M.,Perez-Dorado, I.,Sanz-Aparicio, J.,Gomez-Moreno, C.,Medina, M.,Hermoso, J.A. Structural analysis of interactions for complex formation between Ferredoxin-NADP+ reductase and its protein partners Proteins 2005 59 592 602